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K L A U S J. P A L M E
发布时间:2017-03-23 作者: 浏览次数:1640

 

P R O F.   D R.   K L A U S   J.   P A L M E

 

 

Last Name, Name

PALME, Klaus

 

Position Title

University Professor, Institute of Biology II, University of Freiburg

 

 

                     EDUCATION/TRAINING

   

Institution and Location

Degree

Field of Study

University of Freiburg

University of Ulm

Diploma

Dr. rer. nat.

Chemistry

Biochemistry

 

 

A.     Positions and Honors

 

Employment/Experience

 

1982-1983               Research Fellow, Salk Institute for Biological Studies, San Diego, USA

1984-1985               Research Fellow University of Cologne

1986-1995               Senior scientist and group leader, MPI for Plant Breeding, Cologne

1995-2001               Professor and Head of an Independent Research Group, Max-Delbrück-Laboratorium, Cologne

2000-2001               Professor, Swedish University of Agricultural Sciences, Umea, Sweden

2001-present           Professor, Institute for Biology II / Botany, University Freiburg

2005-present           Board of Directors, Freiburg Center of Systems Biology

2008-present           Principle Investigator, BIOSS Center for Biological Signalling Studies

2010-2014 Executive Director, Institute of Biology

 

Honors, Awards and Scholarships

 

1974-1977               Scholarship, German National Merit Foundation

1993                        Academia Europaea (UK, elected fellow)

1995                        G-Prize (Intospace, Paris)

2000                        European Molecular Biology Organisation (EMBO, elected fellow)

2002                        Max-Planck-Research Award

2006                        DAGM Award

2008-present           Guest Professor, Institute of Genetics and Developmental Biology. Chinese Academy of Sciences, Bejing, PRC

2008-2012 Freiburg Institute of Advanced Studies, Fellow

2013-present       Honorary Professor, Jinan University (China)

2013-present          Guest Professor, North-West A&F University (China)

2015           Academia das Ciências de Lisboa (Portugal, elected fellow)

2017-present           Guest Professor, School of Biological Science and Technology Shandong Agricultural University, PRC

Other Activities

                               

                                Editorial/Advisory Board (´til 2015)

                                Plant Biosystems, Plant Cell Physiology; The Plant Journal, Int. J. Plant Sciences, J. Integ. Plant Biol., Molecular Plant; New Negatives Plant Sciences, Journal of Bioinformatics, Computational and Systems Biology

Editor / Editorial Board (2015-2020): J. Plant Science & Molecular Breeding, Microbiology and Genetics, Springer.

Board of Trustees

                                BioImaging Center LMU, Munich

Board of Trustees

                                Helmut und Elisabeth Uhl Stiftung

Founder                  ScreenSYS GmbH

   

2015-2018

 

German Space Agency (DLR) German Ministry of Economy (BMWi)

Initiator and Coordinator

   Integrative systems analysis of microgravity on growth of Arabidopsis thaliana

2015-2018

 

German Research Council (DFG), Collaborative Research Center (SFB) “Functional specificity by     coupling and modification of proteins”

Principle Investigator

Functional specificity of protein interaction networks in plant hormone dependent regulation of cell fate       determination

2012 – 2016

 

 Academic-Industrial Research Consortium, German Ministry of Research and Technology (BMBF, “eBIO – Innovation for Systems Biology”), Germany

Founder, Coordinator and Principle Investigator

BioSystems Analysis or reprogramming to improve industrial plant embryo production

2012 – 2015

 

German Academic Exchange Service (DAAD) “Plant Bio Goes India”, India & Germany

Initiator and Coordinator

Exchange and Teaching Program for Master and Graduate Students between University of Freiburg, Germany, and the National Institute of Science Education and Research, Bhubaneswar, India

2010-2013

 

German Space Agency (DLR) German Ministry of Economy (BMWi)

Initiator and Coordinator

  Analysis of gravity signalling mechanisms in Arabidopsis thaliana

2009 – 2015

 

 German Research Council (DFG) Priority Programme, Germany

Co-founder and Principle Investigator

“Information- and Communication Theory in Molecular Biology (InKoMiBo)”

2009 – 2012

 

 Academic-Industrial Research Consortium, German Ministry of Research and Technology (BMBF, “Development of Innovative Methods for Systems Biology”), Germany

Founder, Coordinator and Principle Investigator

“Quantitative 3D and 4D cell analysis in living organisms - novel instrumentation, computational tools and proof of concept applications”

2009 – 2012

 

 Academic-Industrial Research Consortium, German Ministry of Research and Technology (BMBF, “Systems Biology Program”), Germany

Co-founder, Coordinator and Principle Investigator

“Systems biology approach to cellular reprogramming in Brassicaceae cells”

2009 – 2012

 

 Academic-Industrial Research Consortium, German Ministry of Research and Technology (BMBF, “Optical Technology Development”), Germany

Co-founder and Principle Investigator

“3-D Analysis of Living Cells in Tissues”

2009 – present

 

 Chinese-German Joint Group for Plant Hormone Research, China & Germany

Co-founder and Principle Investigator

Participating institutions include Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China and Faculty of Biology and Faculty of Biology, University of Freiburg, Germany

2007 – present

 

Centre for Biological Signalling Studies (BIOSS), Germany

Co-founder, Principle Investigator

2007 – present

 

 German Research Council (DFG), Collaborative Research Center (SFB) on “Functional Coupling and    Modification of Proteins”, Germany

Principle Investigator

2005 – present

 

 Centre for Biosystems Analysis (ZBSA), Germany

Co-founder, Board of Directors

2008 – 2010

 

Finish-German Signalling Network (co-funded by Finish Academy of Sciences and German Research Council), Finland & Germany

Co-founder and Principle Investigator

2007 – 2012

 

European Framework Programme (FP7-KBBE-2007, “ENERGY PLANTS - Novel plants for energy production”), European Union

Co-founder and Principle Investigator

“Enhancing Poplar Traits for Energy Applications”

2005 – 2010

 

German Research Council funded Graduate School (GRK 1305) “Signal Systems in Plant Model Organisms”

Initiator and Study Dean

2002 – 2012

 

Collaborative Research Centre on “Signal Mechanisms in Embryogenesis and
Organogenesis”, Germany

Principle Investigator

 

 

   

CITATION METRICS

Thomson Reuters Web of Science 2017

 

 

 

 

 

20 HIGHLY CITED PUBLICATIONS (selected)

Bevan, M., et al. (1998) Sequence of a contiguous 1.9.Mb region from chromosome 4 of Arabidopsis thaliana. Nature 319, 485-488.
Times Cited: 613
DOI: 10.1038/35140

Gälweiler, L., Guan, C., Müller, A., Wisman, E., Mendgen, K., Palme, K. (1998) Regulation of polar auxin transport by AtPIN1 in Arabidopsis vascular tissue. Science 282, 2226-2230.
Times Cited: 814
DOI: 10.1126/science.282.5397.2226

Geldner, N., Friml, J., Stierhof, S., Jürgens, G., Palme, K. (2001) Reversible regulation of polar insertion of AtPIN1. Nature 413, 425-428.
Times Cited: 695
DOI: 10.1038/35096571

Friml, J., Wisniewska, J., Benková, E., Mendgen, K., Palme, K. (2002) Lateral relocalisation of auxin efflux regulator PIN3 mediates tropic growth responses in Arabidopsis. Nature 415, 806-809.
Times Cited: 711
DOI: 10.1038/415806a

Blilou, I., Wildwater, M., Willemsen, V., Papanov, I., Friml, J., Heidstra, R., Palme, K., Scheres, B. (2005) The PIN auxin efflux facilitator network controls patterning and cell division in Arabidopsis roots. Nature 433, 39-44.
Times Cited: 508
DOI: 10.1038/nature03184

Steinmann, T., Geldner, N., Grebe, M., Mangold, S., Jackson, C., Paris, S., Gälweiler, L., Palme, K., Jürgens, G. (1999) Coordinated polar localization of auxin efflux carrier PIN1 by GNOM ARF GEF. Science 286, 316-318.
Times Cited: 472
DOI: 10.1126/science.286.5438.316

Müller, A., Guan, C., Gälweiler, L., Tänzler, P., Huijser, P., Marchant, A., Parry, G., Bennett, M., Wisman, E., Palme, K. (1998) AtPIN2 defines a locus of Arabidopsis for root gravitropism. EMBO J. 17, 101-109.
Times Cited: 381
DOI: 10.1093/emboj/17.23.6903

Friml, J., Benkova, E., Bilou, I., Wisniewska, J., Hamann, T., Ljung, K., Woody, S., Sandberg, G., Scheres, B., Jürgens, G., Palme, K. (2002). AtPIN4 mediates sink-driven auxin gradients and root patterning in Arabidopsis. Cell 108, 661-673.
Times Cited: 435
DOI: 10.1016/S0092-8674(02)00656-6

 

 

20 HIGHLY CITED PUBLICATIONS (selected, cont’d)

Friml, J., Yang, X., Michniewicz, M., Weijers, D., Quint, A., Tietz, O., Benjamins, R., Ouwerkerk, PBF., Ljung, K., Sandberg, G., Hooykaas, PJJ., Palme, K., Offringa, R. (2004) A PINOID-dependent binary switch in apical-basal PIN polar targeting directs auxin efflux. Science 306, 862-865.
Times Cited: 4029
DOI: 10.1126/science.1100618

Swarup, R., Friml, J., Marchant, A., Palme, K., Bennett, M. (2001)Localization of the auxin permease AUX1 suggests two functionally distinct hormone transport pathways operate in the Arabidopsis root apex. Genes & Develop. 15, 2648-2653.
Times Cited: 321
DOI: 10.1101/gad.21050

Teale, W.D., Paponov, I.A., Palme, K. (2006) Auxin in action: signaling, transport and the control of plant growth. Nature Rev. Mol. Cell Biol. 7, 847 – 859.
Times Cited: 363
DOI: 10.1038/nrm2020

Molendijk, A.J., Bischoff, F., Rajendrakumar, C.S.V., Friml, J., Braun, M., Gilroy, S., Palme, K. (2001) Polar localization of Rop GTPases in trichoblast budding and regulation of root hair tip growth. EMBO J. 20, 2779-2788.
Times Cited: 218
DOI: 10.1093/emboj/20.11.2779

Ottenschläger, I., Wolff P., Wolverton, C., Bhalerao, R., Sandberg, G., Ishikawa, H., Evans, M., Palme, K. (2003) Gravity induced auxin transport from Arabidopsis columella to lateral root cap cells. Proc. Natl. Acad. Sci. USA 100, 2987-2991.
Times Cited: 260
DOI: 10.1073/pnas.0437936100

Brzobohaty, B., Moore, I., Kristoffersen, P., Bako, L., Campos, N., Schell, J., Palme, K. (1993) A ß-glucosidase that releases active cytokinin is localized in the maize root meristem. Science 262, 1051-1054.
Times Cited: 185
DOI: 10.1126/science.8235622

Hesse, T., Feldwisch, J., Balshüsemann, D., Bauw, D., Puype, M., Vandekerckhove, J., Löbler, M., Klämbt, D., Schell, J., Palme, K. (1989) Molecular cloning and structural analysis of a gene from Zea mays (L.) coding for a putative receptor for the plant hormone auxin. EMBO J. 8, 2453-2461.
Times Cited: 154

Reinemer, P., Prade, L., Hof, P., Neuefeind, T., Huber, R., Zettl, R., Palme, K., Schell, J., Koelln, I., Bartunik, H.D., Bieseler, B. (1996) Three-dimensional structure of glutathione S-transferase from Arabidopsis thaliana at 2.2 A resolution. Structural characterization of herbicide conjugating plant glutathione S-transferases and a new active site architecture. J. Mol. Biol. 255, 289-309.
Times Cited: 144
DOI: 10.1006/jmbi.1996.0024

Friml, J., Palme, K. (2002) Auxin transport in plant development old concepts, new questions. Plant Mol. Biol. 49, 273-284.
Times Cited: 143
DOI: 10.1023/A:1015248926412

Paponov, I., Teale, W.D., Trebar, M., Blilou, I., Palme, K. (2005) The PIN auxin efflux facilitators: evolutionary and functional perspectives. Trends Plant Sci. 10, 170-177.
Times Cited: 139
DOI: 10.1016/j.tplants.2005.02.009

Reintanz, B., Lehnen, M., Reichelt, M., Gershenzon, J., Kowalczyk, M., Sandberg, G., Godde, M., Uhl, R., Palme, K. (2001)
Bus – a bushy Arabidopsis CYP79F1 knockout mutant with abolished synthesis of short-chain aliphatic glucosinolates. Plant Cell 13, 351-367.
Times Cited: 137
DOI: 10.2307/3871281

Rück, A., Palme, K., Hesse, F., Venis, M., Napier, R., Felle, H. (1993) Patch clamp analysis establishes a role for ERabp in the control of IAA dependent ion fluxes in Zea mays protoplasts. Plant J. 4, 41-46.
Times Cited: 131
DOI: 10.1046/j.1365-313X.1993.04010041.x

 

 

Short biography

Klaus Palme isolated and characterized the first plant hormone receptor gene, later he discovered and functional analyzed the PIN gene family, thereby making a globally acknowledged breakthrough which has fuelled the analysis of this important plant process for many years and by numerous followers around the world. He opened new important fields in plant biology. Klaus Palme has an excellent track record in excellent research and teaching in both academia and industry as reflected by international recognitions and prizes and foundation of a biotechnology company. Many of his publications are highly cited illustrating the high quality and attractiveness. His work is acknowledged by several prizes, documented by the choice in international scientific organizations, and through the prestigious Humboldt foundation. He has been and is a plenary speaker at and organizer of major national and international conferences in the field of biological signaling, breeding and systems biology.

 

Publications 2014-2016

 

Schmidt, T., Dürr, J., Keuper, M., Blein, T., Palme, K., Ronneberger, O. (2014) Variational attenuation correction in Two-View Confocal Microscopy. BMC Informatics 14, 366.

Liu, K., Skibbe, H., Schmidt, T.,  Blein, T., Palme, K., Brox, T., Ronneberger, O. (2014) Rotation-invariant HOG descriptors using Fourier analysis in polar and spherical coordinates. Int. J. Computer Vision 10, 342-364.

Mai, D., Dürr, J., Palme, K., Ronneberger, O. (2014) Accurate Detection in Volumetric Images Using Elastic Registration Based Validation. Lect. Note Comp. Sci. 8753, 453-463.

Aubry-Hivet, D., Nziengui, H., Rapp, K., Oliveira, O., Paponov, I., Li, Y., Vagt, N., Hauslage, J., Braun, M., Ditengou, F.A., Dovzhenko, A., Palme, K. (2014) Analysis of gene expression during parabolic flights reveals distinct early gravity responses in Arabidopsis root tips. Plant Biology 16, 129-141.

Ruyters, G., Spiero, F, Legue, V., Palme, K. (2014) Plant biology in space. Plant Biol. 16, 1-3.

Schmidt, T., Pasternak, T., Aubry, D., Dovzhenko, A., Teale, W., Burkhardt, H., Ronneberger, O., Palme, K. (2014) The iRoCS Toolbox - 3D analysis of the plant root apical meristem at cellular resolutiont. Plant J. 77, 806-814.

Hosp, J., Ribarits, A., Szaszka, K., Jin, Y., Tashpulatov, A.,  Baumann, M., Resch, T., Friedmann, C., Ankele, E., Voronin, V., Palme, K., Heberle-Bors, E., Touraev, A. (2014) A tobacco homolog of DCN1 is involved in cellular reprogramming and in developmental transitions. Plant Cell Reports 33, 1187-1202.

Palme, K., Li, X., Teale, W.D. (2014) Towards second green revolution: engineering nitrogen use efficiency. J. Genet. Genomics 41, 315-316.

Ditengou, F.A., Müller, A., Rosenkranz, M., Felten, J., Legué, V., Palme, K., Schnitzler, J.P., Polle, A. (2015a) Volatile signalling by sesquiterpenes from ectomycorrhizal fungi reprograms root architecture. Nature Comm. 6:6279,DOI: 10.1038/ncomms7279.

Wang, H., Xugang Li, X., Krause, L., Görög, M., Schüler, O., Hauslage, J., Hemmersbach, R., Kircher, S., Lasok, H., Haser, T., Rapp, K., Schmidt, J,, Yu, X., Pasternak, T., Aubry-Hivet, D., Tietz, O., Dovzhenko, A.,  Palme, K., Ditengou, F.A. (2015) 2-D Clinostat for Simulated Microgravity Experiments with Arabidopsis Seedlings. Microgravity Sci. Technol. 28, 59-66.10.1007/s12217-015-9478-1.

Pasternak, T., Tietz, O., Rapp, K., Begheldo, M., Nitschke, R., Ruperti, B., Palme, K. (2015) Protocol: an improved and universal procedure for whole-mount immunolocalization in plants. Plant Methods 11, 50. DOI: 10.1186/s13007-015-0094-2.

Bi, Z., Merl-Pham, J., Uehlein, N., Mühlhans, S., Zimmer, I., Voss, A., Walch, A.K., Kaldenhoff, R., Palme, K., Schnitzler, J.-P., Block, K. (2015) RNAi-mediated down-regulation of plasma membrane intrinsic proteins (PIPs) and its multi-scale effects in poplar: a proteomic and physiological survey. J. Proteomics 128, 321-332.

Zermiani, M., Zonin, E., Nonis, A., Begheldo, M., Pegoraro, M.,  Vezzaro, A., Baldan, B., Trentin, A., Masi, A., Ceccato, L., Fadanelli, L., Ramina, A., Palme, K., Quintier, L., Benedetto Ruperti, B. (2014) Identification of the Arabidopsis RAM/MOR signalling network: adding new regulatory players in plant stem cell maintenance and cell polarization. Annals Botany 116, 69-89.

Zermiani, Monica; Zonin, Elisabetta; Nonis, Alberto; et al. (2015) Ethylene negatively regulates transcript abundance of ROP-GAP rheostat-encoding genes and affects apoplastic reactive oxygen species homeostasis in epicarps of cold stored apple fruits. J. Exp. Bot. 66, 7255-7270.

Omelyanchuk, N.A., Kovrizhnykh, V.V., Oshchepkova,  E.A., Pasternak, T., Palme, K., Mironova, V.V. (2016) A detailed expression map of PIN1 auxin transporter in Arabidopsis thaliana root. BMC Plant Biology 16 Suppl 1 DOI: 10.1186/s12870-015-0685-0.

Schopfer, P., Palme, K. (2016) Inhibition of cell expansion by rapid ABP1-mediated auxin effect on microtubules? A critical comment. Plant Physiology 170, 23-25.

Dalal, J., Lewis, D.R., Tietz, O., Brown, E.M., Brown, C.S., Palme, K., Muday, G.K., Sederoff, H.W. (2016) ROSY1, a novel regulator of gravitropic response is a stigmasterolbinding protein. J. Plant Physiol. 196, 28-40.

Carranza, A.P.S., Singh, A., Steinberger, K., Panigrahi, K., Palme, K., Dovzhenko, A., Dal Bosco (2016) Hydrolases of the ILR1-like family of Arabidopsis thaliana modulate auxin response by regulating auxin homeostasis in the endoplasmic reticulum. Scientific Reports 6, 24212. DOI 10.1038/srep24212.

Meinert, T., Tietz, O., Palme, K., Rohrbach, A. (2016) Separation of ballistic and diffusive fluorescence photons in confocal Light-Sheet Microscopy of Arabidopsis roots. Scientific Reports 6, 30378. DOI 10.1038/srep30378.

Palme, K., Teale, W., Dovzhenko, A. (2016) Plant Signaling: HY5 Synchronizes Resource Supply. Current Biology 26, R328-R329.

Chuprov–Netochin, R., Neskorodov, J., Marusich, E., Mishutkina, Y.,  Volynchuk, P., Leonov, S., Skryabin, K., Ivashenko, A., Palme, K., Touraev, A. (2015) Novel small molecule modulators of plant growth and development identified by high-content screening with plant pollen. BMC Plant Biology 16, 192. DOI: 10.1186/s12870-016-0875-4.

Johnson, G., Kangas, J., Dovzhenko, A., Trojok, R.,  Voigt, K., Majarian, T., Palme, K., Murphy, R.F. (2016) A method for characterizing phenotypic changes in highly variable cell populations and its application to high content screening of Arabidopsis thaliana protoplasts. Cytometry A. Vol 91, in press (including journal Feature on this article).

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